Files in BIMSBbioinfo/RCAS
RNA Centric Annotation System

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/data.R R/databaseSetUpFunctions.R R/enrichment_analysis.R R/meta_analysis_functions.R R/motif_analysis.R R/plotting_functions.R R/report_functions.R
RCAS.Rproj
README.md
data/geneSets.rda
data/gff.rda
data/queryRegions.rda
inst/CITATION
inst/NEWS
inst/extdata/EIF4A3Sauliere20121a.bed
inst/extdata/EIF4A3Sauliere20121b.bed
inst/extdata/FMR1_Ascano2012a_hg19.bed
inst/extdata/FMR1_Ascano2012b_hg19.bed
inst/extdata/FUS_Nakaya2013c_hg19.bed
inst/extdata/FUS_Nakaya2013d_hg19.bed
inst/extdata/hg19.RCASDB.sqlite
inst/extdata/hg19.sample.gtf
inst/extdata/hg19.sample.gtf.granges.rds
inst/extdata/msigdb_test.gmt
inst/extdata/testfile.bed
inst/extdata/testfile2.bed
inst/reporting_scripts/footer.html
inst/reporting_scripts/header.html
inst/reporting_scripts/report.Rmd inst/reporting_scripts/reportMetaAnalysis.Rmd man/calculateCoverageProfile.Rd man/calculateCoverageProfileFromTxdb.Rd man/calculateCoverageProfileList.Rd man/calculateCoverageProfileListFromTxdb.Rd man/createControlRegions.Rd man/createDB.Rd man/createOrthologousGeneSetList.Rd man/deleteSampleDataFromDB.Rd man/discoverFeatureSpecificMotifs.Rd man/extractSequences.Rd man/geneSets.Rd man/getFeatureBoundaryCoverage.Rd man/getFeatureBoundaryCoverageBin.Rd man/getFeatureBoundaryCoverageMulti.Rd man/getIntervalOverlapMatrix.Rd man/getMotifSummaryTable.Rd man/getTargetedGenesTable.Rd man/getTxdbFeatures.Rd man/getTxdbFeaturesFromGRanges.Rd man/gff.Rd man/importBed.Rd man/importBedFiles.Rd man/importGtf.Rd man/parseMsigdb.Rd man/plotFeatureBoundaryCoverage.Rd man/printMsigdbDataset.Rd man/queryGff.Rd man/queryRegions.Rd man/retrieveOrthologs.Rd man/runGSEA.Rd man/runMotifRG.Rd man/runReport.Rd man/runReportMetaAnalysis.Rd man/runTopGO.Rd man/summarizeDatabaseContent.Rd man/summarizeQueryRegions.Rd man/summarizeQueryRegionsMulti.Rd tests/testthat.R tests/testthat/test_GO.R tests/testthat/test_data.R tests/testthat/test_database_functions.R tests/testthat/test_motif.R tests/testthat/test_msigdb.R tests/testthat/test_report.R tests/testthat/test_txdbfeatures.R vignettes/RCAS.metaAnalysis.vignette.Rmd vignettes/RCAS.vignette.Rmd
BIMSBbioinfo/RCAS documentation built on April 7, 2018, 12:45 a.m.