getMotifSummaryTable: getMotifSummaryTable

In BIMSBbioinfo/RCAS: RNA Centric Annotation System

getMotifSummaryTable

Description

Get summary stats for top discovered motifs

Usage

getMotifSummaryTable(motifResults)

Arguments

motifResults

Output object of runMotifDiscovery function

Value

A data.frame object containing summary statistics about the discovered motifs

Examples

data(queryRegions)
motifResults <- runMotifDiscovery(queryRegions = queryRegions[1:1000],
                                  genomeVersion = 'hg19',
                                  resize = 15,
                                  motifN = 1,
                                  maxMismatch = 1,
                                  nCores = 2)
motifSummary <- getMotifSummaryTable(motifResults)

BIMSBbioinfo/RCAS documentation built on Feb. 7, 2024, 4:38 p.m.