getTxdbFeaturesFromGRanges: getTxdbFeaturesFromGRanges
In BIMSBbioinfo/RCAS: RNA Centric Annotation System
getTxdbFeaturesFromGRanges R Documentation
getTxdbFeaturesFromGRanges
Description
This function takes as input a GRanges object that contains GTF file contents
(e.g from the output of importGtf function).
Then extracts the coordinates of gene features
such as promoters, introns, exons, 5'/3' UTRs and
whole transcripts.
Usage
getTxdbFeaturesFromGRanges(gffData)
Arguments
gffData
A GRanges object imported by importGtf function
Value
A list of GRanges objects
Examples
data(gff)
txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff)
BIMSBbioinfo/RCAS documentation built on Feb. 7, 2024, 4:38 p.m.
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| getTxdbFeaturesFromGRanges | R Documentation |
getTxdbFeaturesFromGRanges
Description
This function takes as input a GRanges object that contains GTF file contents
(e.g from the output of importGtf function).
Then extracts the coordinates of gene features
such as promoters, introns, exons, 5'/3' UTRs and
whole transcripts.
Usage
getTxdbFeaturesFromGRanges(gffData)
Arguments
gffData |
A GRanges object imported by |
Value
A list of GRanges objects
Examples
data(gff)
txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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