getPWM: getPWM
In BIMSBbioinfo/RCAS: RNA Centric Annotation System
View source: R/motif_analysis.R
getPWM R Documentation
getPWM
Description
Given a vector of strings of equal width, generate a position-specific
weight matrix based on the frequency of occurrence of the unique letters
found in the sequences.
Usage
getPWM(sequences, letters = c("A", "C", "G", "T"))
Arguments
sequences
vector of strings of equal widths.
letters
vector of characters to consider as the an alphabet
Value
A matrix of position-specific-weights.
Examples
sequences = c("GGAGAG", "GAAGAA", "TGAGAA", "GGAGAA", "GAAGAA")
getPWM(sequences)
BIMSBbioinfo/RCAS documentation built on Feb. 7, 2024, 4:38 p.m.
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View source: R/motif_analysis.R
| getPWM | R Documentation |
getPWM
Description
Given a vector of strings of equal width, generate a position-specific weight matrix based on the frequency of occurrence of the unique letters found in the sequences.
Usage
getPWM(sequences, letters = c("A", "C", "G", "T"))
Arguments
sequences |
vector of strings of equal widths. |
letters |
vector of characters to consider as the an alphabet |
Value
A matrix of position-specific-weights.
Examples
sequences = c("GGAGAG", "GAAGAA", "TGAGAA", "GGAGAA", "GAAGAA")
getPWM(sequences)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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