DiffLogo: DiffLogo: A comparative visualisation of sequence motifs

DiffLogo is an easy-to-use tool to visualize motif differences.

AuthorMartin Nettling [aut], Hendrik Treutler [aut, cre], Jan Grau [aut, ctb], Jens Keilwagen [aut, ctb], Stefan Posch [aut], Ivo Grosse [aut]
Date of publicationNone
MaintainerHendrik Treutler <htreutle@ipb-halle.de>
LicenseGPL (>= 2)
Version1.4.0
https://github.com/mgledi/DiffLogo/

View on Bioconductor

Files

DiffLogo/DESCRIPTION
DiffLogo/NAMESPACE
DiffLogo/R
DiffLogo/R/alphabet.R DiffLogo/R/baseDistrs.R DiffLogo/R/diffSeqLogo.R DiffLogo/R/preconditions.R DiffLogo/R/seqLogo.R DiffLogo/R/stackHeights.R DiffLogo/R/utilities.R
DiffLogo/README.md
DiffLogo/build
DiffLogo/build/vignette.rds
DiffLogo/inst
DiffLogo/inst/CITATION
DiffLogo/inst/doc
DiffLogo/inst/doc/DiffLogoBasics.R
DiffLogo/inst/doc/DiffLogoBasics.Rnw
DiffLogo/inst/doc/DiffLogoBasics.pdf
DiffLogo/inst/extdata
DiffLogo/inst/extdata/alignments
DiffLogo/inst/extdata/alignments/F-box_bacteria.seq.fa
DiffLogo/inst/extdata/alignments/F-box_fungi.seq.fa
DiffLogo/inst/extdata/alignments/F-box_metazoa.seq.fa
DiffLogo/inst/extdata/alignments/F-box_viridiplantae.seq.fa
DiffLogo/inst/extdata/alignments/Mad.txt
DiffLogo/inst/extdata/alignments/Max.txt
DiffLogo/inst/extdata/alignments/Myc.txt
DiffLogo/inst/extdata/alignments/calamodulin_1.txt
DiffLogo/inst/extdata/alignments/calamodulin_2.txt
DiffLogo/inst/extdata/alignments/phosphorylation_1.txt
DiffLogo/inst/extdata/alignments/phosphorylation_2.txt
DiffLogo/inst/extdata/alignments/ubiquitination_1.txt
DiffLogo/inst/extdata/alignments/ubiquitination_2.txt
DiffLogo/inst/extdata/pwm
DiffLogo/inst/extdata/pwm/GM12878.txt
DiffLogo/inst/extdata/pwm/H1-hESC.txt
DiffLogo/inst/extdata/pwm/HUVEC.txt
DiffLogo/inst/extdata/pwm/HeLa-S3.txt
DiffLogo/inst/extdata/pwm/HepG2.txt
DiffLogo/inst/extdata/pwm/K562.txt
DiffLogo/inst/extdata/pwm/MCF7.txt
DiffLogo/inst/extdata/pwm/NHEK.txt
DiffLogo/inst/extdata/pwm/ProgFib.txt
DiffLogo/man
DiffLogo/man/ASN.Rd DiffLogo/man/Alphabet.Rd DiffLogo/man/DNA.Rd DiffLogo/man/RNA.Rd DiffLogo/man/createDiffLogoObject.Rd DiffLogo/man/diffLogo.Rd DiffLogo/man/diffLogoFromPwm.Rd DiffLogo/man/diffLogoTable.Rd DiffLogo/man/differenceOfICs.Rd DiffLogo/man/getPwmFromAlignment.Rd DiffLogo/man/informationContent.Rd DiffLogo/man/lossOfAbsICDifferences.Rd DiffLogo/man/normalizedDifferenceOfProbabilities.Rd DiffLogo/man/probabilities.Rd DiffLogo/man/seqLogo.Rd DiffLogo/man/shannonDivergence.Rd DiffLogo/man/sumOfAbsICDifferences.Rd DiffLogo/man/sumOfAbsProbabilityDifferences.Rd DiffLogo/man/sumProbabilities.Rd
DiffLogo/scripts
DiffLogo/scripts/DiffLogoExample.R
DiffLogo/scripts/DiffLogo_dna_example.R
DiffLogo/scripts/MotifDbTest.R
DiffLogo/scripts/ctcf.R
DiffLogo/scripts/ebox.R
DiffLogo/scripts/fbox.R
DiffLogo/tests
DiffLogo/tests/testthat
DiffLogo/tests/testthat.R
DiffLogo/tests/testthat/test_baseDistributions.R
DiffLogo/tests/testthat/test_stackHeights.R
DiffLogo/tests/testthat/test_utilities.R
DiffLogo/vignettes
DiffLogo/vignettes/DiffLogoBasics.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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