getPwmFromAlignmentFile: generates a pwm from an alignment file

Description Usage Arguments Value Examples

View source: R/utilities.R

Description

generates a pwm from an alignment file

Usage

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getPwmFromAlignmentFile(filename, alphabet = NULL)

Arguments

filename

the alignment file

alphabet

the desired alphabet of type Alphabet

Value

a pwm

Examples

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fileName = "extdata/alignments/calamodulin_1.txt"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromAlignmentFile(file)

DiffLogo documentation built on Nov. 1, 2018, 2:24 a.m.