getPwmFromAlignmentFile: generates a pwm from an alignment file
In DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs
Description
Usage
Arguments
Value
Examples
Description
generates a pwm from an alignment file
Usage
1
getPwmFromAlignmentFile(filename, alphabet = NULL)
Arguments
filename
the alignment file
alphabet
the desired alphabet of type Alphabet
Value
a pwm
Examples
1
2
3
fileName = "extdata/alignments/calamodulin_1.txt"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromAlignmentFile(file)
DiffLogo documentation built on Nov. 8, 2020, 6:09 p.m.
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Description Usage Arguments Value Examples
Description
generates a pwm from an alignment file
Usage
1 | getPwmFromAlignmentFile(filename, alphabet = NULL)
|
Arguments
filename |
the alignment file |
alphabet |
the desired alphabet of type Alphabet |
Value
a pwm
Examples
1 2 3 | fileName = "extdata/alignments/calamodulin_1.txt"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromAlignmentFile(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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