diffLogoTable: Draw DiffLogo-table

In DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs

Description

Draws a table of DiffLogos.

Usage

diffLogoTable(PWMs, sampleSizes = NULL, alphabet = DNA,
  configuration = list(), ...)

Arguments

PWMs	a list/vector of position weight matrices (PWMs) each of type pwm, data.frame, or matrix
sampleSizes	the number of sequences behind each PWM
alphabet	the alphabet of the given PWMs
configuration	list of (probably part of) of configuration options. See diffLogoTableConfiguration.
...	set of parameters passed to the function 'axis' for plotting

Value

none (draws table of difference logos)

Author(s)

Martin Nettling

Examples

motif_folder= "extdata/pwm"
motif_names = c("HepG2","MCF7","HUVEC","ProgFib")
motifs = list()
for (name in motif_names) {
  fileName = paste(motif_folder,"/",name,".pwm",sep="")
  file = system.file(fileName, package = "DiffLogo")
  motifs[[name]] = getPwmFromPwmFile(file)
}

diffLogoTable(motifs)

DiffLogo documentation built on Nov. 8, 2020, 6:09 p.m.