ASN: ASN alphabet

In DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs

Description

the amino acid alphabet (20 symbols), i.e. A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T, V, W, Y

Usage

ASN

Format

An object of class Alphabet of length 4.

Author(s)

Martin Nettling

Examples

ASN

Example output

Loading required package: cba
Loading required package: grid
Loading required package: proxy

Attaching package: ‘proxy’

The following objects are masked from ‘package:stats’:

    as.dist, dist

The following object is masked from ‘package:base’:

    as.matrix

$chars
 [1] "A" "C" "D" "E" "F" "G" "H" "I" "K" "L" "M" "N" "P" "Q" "R" "S" "T" "V" "W"
[20] "Y"

$cols
 [1] "Light green" "Green"       "Dark green"  "Dark green"  "violet"     
 [6] "Light green" "DarkBlue"    "Blue"        "Orange"      "Blue"       
[11] "Blue"        "Dark green"  "Pink"        "Dark green"  "Orange"     
[16] "Red"         "Red"         "Blue"        "violet"      "violet"     

$size
[1] 20

$supportReverseComplement
[1] FALSE

attr(,"class")
[1] "Alphabet"

DiffLogo documentation built on Nov. 8, 2020, 6:09 p.m.