API for DiffLogo
DiffLogo: A comparative visualisation of biooligomer motifs

Global functions
ASN Man page
Alphabet Man page Source code
DNA Man page
FULL_ALPHABET Man page
Letter Source code
RNA Man page
addLastTreeNodeToDistanceMatrix Source code
alignPwmSets Man page Source code
alignmentTree Source code
alignmentTreeLeftRightTriversal Source code
baseDistributionPwm Man page Source code
calculatePvalue Man page Source code
createDiffLogoObject Man page
diffLogo Man page
diffLogoFromPwm Man page
diffLogoTable Man page
diffLogoTableConfiguration Man page Source code
differenceOfICs Man page Source code
divergencePenaltyForUnaligned Source code
drawDiffLogoTable Man page
enrichDiffLogoObjectWithPvalues Man page Source code
enrichDiffLogoTableWithPvalues Man page Source code
extendPwmsFromAlignmentVector Man page Source code
extractNames Source code
findBestShiftForPwmSets Source code
findBestShiftForPwms Source code
getAlphabetFromCharacters Man page Source code
getAlphabetFromSequences Man page Source code
getMarginsDiffLogo Source code
getMarginsSeqLogo Source code
getPwmFromAlignment Man page Source code
getPwmFromAlignmentFile Man page Source code
getPwmFromFastaFile Man page Source code
getPwmFromFile Man page Source code
getPwmFromHomerFile Man page Source code
getPwmFromPfmOrJasparFile Man page Source code
getPwmFromPwmFile Man page Source code
getSequencesFromAlignmentFile Man page Source code
getSequencesFromFastaFile Man page Source code
informationContent Man page
joinTwoNodesInAlignmentTree Source code
localPwmAlignment Man page Source code
lossOfAbsICDifferences Man page Source code
minimumMatrixElementIndexes Source code
multipleLocalPwmsAlignment Man page Source code
normalizePWM Man page Source code
normalizedDifferenceOfProbabilities Man page Source code
preconditionBaseDistribution Source code
preconditionPWM Source code
preconditionPWMSameSize Source code
preconditionProbabilityVector Source code
preconditionStackHeight Source code
preconditionTransformPWM Source code
preconditionVectorSameSize Source code
prepareDiffLogoTable Man page
probabilities Man page Source code
pwmDivergence Man page Source code
pwmsDistanceMatrix Man page Source code
reverseAlignmentVector Man page Source code
seqLogo Man page
shannonDivergence Man page Source code
sumOfAbsICDifferences Man page Source code
sumOfAbsProbabilityDifferences Man page Source code
sumProbabilities Man page
switchDirection Man page Source code
twoSetsAveragePwmDivergenceFromAlignmentVector Man page Source code
DiffLogo documentation built on Oct. 31, 2019, 2:09 a.m.