informationContent: information content
In DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs
Description
Usage
Arguments
Value
Author(s)
Examples
Description
the information content for the given probability vector
Usage
1
Arguments
p
probability vector representing the symbol distribution
Value
an object consisting of height a ylab
Author(s)
Martin Nettling
Examples
1
2
3
4
5
6
motif_folder= "extdata/pwm"
motif_name = "HepG2"
fileName = paste(motif_folder,"/",motif_name,".pwm",sep="")
file = system.file(fileName, package = "DiffLogo")
motif = getPwmFromPwmFile(file)
seqLogo(pwm = motif, stackHeight = informationContent)
DiffLogo documentation built on Nov. 8, 2020, 6:09 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
the information content for the given probability vector
Usage
1 |
Arguments
p |
probability vector representing the symbol distribution |
Value
an object consisting of height a ylab
Author(s)
Martin Nettling
Examples
1 2 3 4 5 6 | motif_folder= "extdata/pwm"
motif_name = "HepG2"
fileName = paste(motif_folder,"/",motif_name,".pwm",sep="")
file = system.file(fileName, package = "DiffLogo")
motif = getPwmFromPwmFile(file)
seqLogo(pwm = motif, stackHeight = informationContent)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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