twoSetsAveragePwmDivergenceFromAlignmentVector: Average divergence between two sets.

Description Usage Arguments Value Author(s)

View source: R/pwmAlignment.R

Description

Computes average pwm divergence from alignment vector for two datasets. This equals to average divergence between all pairs where one pwm comes from left set, and other comes from right

Usage

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twoSetsAveragePwmDivergenceFromAlignmentVector(left_pwms_list,
  left_pwms_alignment, right_pwms_list, right_pwms_alignment,
  divergence = shannonDivergence)

Arguments

left_pwms_list

is a list of matrixes

left_pwms_alignment

is a list of shifts ($shift) and orientations ($direction)

right_pwms_list

is a list of matrixes

right_pwms_alignment

is a list of shifts ($shift) and orientations ($direction)

divergence

divergence measure.

Value

float

Author(s)

Lando Andrey


DiffLogo documentation built on Nov. 1, 2018, 2:24 a.m.