twoSetsAveragePwmDivergenceFromAlignmentVector: Average divergence between two sets.
In DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs

Description Usage Arguments Value Author(s)

Computes average pwm divergence from alignment vector for two datasets. This equals to average divergence between all pairs where one pwm comes from left set, and other comes from right

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twoSetsAveragePwmDivergenceFromAlignmentVector(left_pwms_list,
  left_pwms_alignment, right_pwms_list, right_pwms_alignment,
  divergence = shannonDivergence)

`left_pwms_list`	is a list of matrixes
`left_pwms_alignment`	is a list of shifts ($shift) and orientations ($direction)
`right_pwms_list`	is a list of matrixes
`right_pwms_alignment`	is a list of shifts ($shift) and orientations ($direction)
`divergence`	divergence measure.