linquynus/TFregulomeR: TFregulomeR reveals transcription factors’ context-specific features and functions

An R-package linked to a large timely-updated compendium of cistrome and methylome datasets, implemented with functionalities that facilitate the manipulation and analysis of TFBS and methylome meta-data. In particular, TFregulomeR permits the characterisation of TF binding partners and cell-specific TFBSs, along with the study of TF’s functions in the context of different partners’ combinations and DNA methylation levels.

Getting started

Package details

Bioconductor views ChIPSeq DNAMethylation Epigenetics MethylSeq MotifAnnotation Transcription
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
linquynus/TFregulomeR documentation built on April 27, 2022, 5:01 a.m.