plotLogo: plot (Meth)Motif logo
In linquynus/TFregulomeR: TFregulomeR reveals transcription factors’ context-specific features and functions
plotLogo R Documentation
plot (Meth)Motif logo
Description
This function allows you to plot (Meth)Motif logo.
Usage
plotLogo(MM_object, logo_type = "entropy", meth_level = "all")
Arguments
MM_object
Required. MethMotif class object
logo_type
Logo type for the (Meth)Motif logo to be saved, either "entropy" (default) or "frequency".
meth_level
Methylation level to be plot for the (Meth)Motif logo, and it should be one of the values, "all" (default), "methylated", and "unmethylated".
Value
(Meth)Motif logo pdf file. If the TFregulomeR peak source is from MethMotif, MethMotif logo will be saved; if the source is GTRD, only motif logo will be saved.
Examples
K562_CEBPB <- searchMotif(id = "MM1_HSA_K562_CEBPB")
plotLogo(MM_object = K562_CEBPB)
linquynus/TFregulomeR documentation built on April 27, 2022, 5:01 a.m.
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| plotLogo | R Documentation |
plot (Meth)Motif logo
Description
This function allows you to plot (Meth)Motif logo.
Usage
plotLogo(MM_object, logo_type = "entropy", meth_level = "all")
Arguments
MM_object |
Required. MethMotif class object |
logo_type |
Logo type for the (Meth)Motif logo to be saved, either "entropy" (default) or "frequency". |
meth_level |
Methylation level to be plot for the (Meth)Motif logo, and it should be one of the values, "all" (default), "methylated", and "unmethylated". |
Value
(Meth)Motif logo pdf file. If the TFregulomeR peak source is from MethMotif, MethMotif logo will be saved; if the source is GTRD, only motif logo will be saved.
Examples
K562_CEBPB <- searchMotif(id = "MM1_HSA_K562_CEBPB") plotLogo(MM_object = K562_CEBPB)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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