plotDistrib: plot TFBS distribution from motifDistrib() output

In linquynus/TFregulomeR: TFregulomeR reveals transcription factors’ context-specific features and functions

plot TFBS distribution from motifDistrib() output

Description

This function allows you to plot TFBS distributions in a given list of peak sets from the output of motifDistrib().

Usage

plotDistrib(motifDistrib)

Arguments

motifDistrib

Required. motifDistrib() output.

Value

TFBS distribution PDF file.

Examples

CEBPB_peaks <- loadPeaks(id = "MM1_HSA_K562_CEBPB")
motifDistrib_output <- motifDistrib(id = "MM1_HSA_K562_CEBPB",
                                    peak_list = list(CEBPB_peaks[1:100,]),
                                    peak_id = c("MM1_HSA_K562_CEBPB"))
plotDistrib(motifDistrib = motifDistrib_output)

linquynus/TFregulomeR documentation built on April 27, 2022, 5:01 a.m.