dataBrowser: Browse the current data available in TFregulomeR

View source: R/dataBrowser.R

dataBrowserR Documentation

Browse the current data available in TFregulomeR

Description

This function allows you to get the current data in TFregulomeR

Usage

dataBrowser(species, organ, sample_type, cell_tissue_name, tf,
  disease_state, source, server = "sg", TFregulome_url)

Arguments

species

The species of interset

organ

The organ of interset

sample_type

The sample type of interset

cell_tissue_name

The name of tissue or cell of interset

tf

The TF of interset

disease_state

The disease state of interset

source

The source of interset

server

server localtion to be linked, either 'sg' or 'ca'.

TFregulome_url

TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "http://bioinfo-csi.nus.edu.sg/methmotif/" or "http://methmotif.org", please use a new url.

Value

data.frame containing the information of the queried TFBSs in TFregulomeR

Examples

TFBS_brain <- dataBrowser(organ = "brain")

linquynus/TFregulomeR documentation built on April 27, 2022, 5:01 a.m.