loadPeaks: load peaks from TFregulomeR
In linquynus/TFregulomeR: TFregulomeR reveals transcription factors’ context-specific features and functions
loadPeaks R Documentation
load peaks from TFregulomeR
Description
This function allows you to obtain the peaks from TFregulomeR using TFregulomeR ID.
Usage
loadPeaks(id, includeMotifOnly = FALSE, server = "sg", TFregulome_url)
Arguments
id
Required. TFregulomeR ID
includeMotifOnly
Either TRUE or FALSE (default). If TRUE, only peaks with motif will be returned
server
server localtion to be linked, either 'sg' or 'ca'.
TFregulome_url
TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "http://bioinfo-csi.nus.edu.sg/methmotif/" or "http://methmotif.org", please use a new url.
Value
a data.frame containing peak coordinates
Examples
CEBPB_peaks <- loadPeaks(id = "MM1_HSA_K562_CEBPB")
linquynus/TFregulomeR documentation built on April 27, 2022, 5:01 a.m.
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| loadPeaks | R Documentation |
load peaks from TFregulomeR
Description
This function allows you to obtain the peaks from TFregulomeR using TFregulomeR ID.
Usage
loadPeaks(id, includeMotifOnly = FALSE, server = "sg", TFregulome_url)
Arguments
id |
Required. TFregulomeR ID |
includeMotifOnly |
Either TRUE or FALSE (default). If TRUE, only peaks with motif will be returned |
server |
server localtion to be linked, either 'sg' or 'ca'. |
TFregulome_url |
TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "http://bioinfo-csi.nus.edu.sg/methmotif/" or "http://methmotif.org", please use a new url. |
Value
a data.frame containing peak coordinates
Examples
CEBPB_peaks <- loadPeaks(id = "MM1_HSA_K562_CEBPB")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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