vodkatad/MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Getting started

Package details

AuthorElena Grassi
Bioconductor views GeneRegulation Genetics MotifAnnotation
MaintainerElena Grassi <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
vodkatad/MatrixRider documentation built on May 3, 2019, 6:39 p.m.