pqsfinder: Identification of potential quadruplex forming sequences

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

Package details

AuthorJiri Hon, Dominika Labudova, Matej Lexa and Tomas Martinek
Bioconductor views GeneRegulation MotifDiscovery SequenceMatching
MaintainerJiri Hon <jiri.hon@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version2.4.0
URL https://pqsfinder.fi.muni.cz
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pqsfinder")

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pqsfinder documentation built on April 29, 2020, 2:33 a.m.