pqsfinder: Identification of potential quadruplex forming sequences

The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.

AuthorJiri Hon, Matej Lexa and Tomas Martinek
Date of publicationNone
MaintainerJiri Hon <jiri.hon@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version1.2.3

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Files in this package

pqsfinder/DESCRIPTION
pqsfinder/LICENSE
pqsfinder/NAMESPACE
pqsfinder/NEWS
pqsfinder/R
pqsfinder/R/PQSViews-class.R pqsfinder/R/RcppExports.R
pqsfinder/build
pqsfinder/build/vignette.rds
pqsfinder/inst
pqsfinder/inst/doc
pqsfinder/inst/doc/pqsfinder.R
pqsfinder/inst/doc/pqsfinder.Rmd
pqsfinder/inst/doc/pqsfinder.html
pqsfinder/man
pqsfinder/man/PQSViews-class.Rd pqsfinder/man/PQSViews.Rd pqsfinder/man/as.character-PQSViews-method.Rd pqsfinder/man/density-PQSViews-method.Rd pqsfinder/man/pqsfinder.Rd pqsfinder/man/score-PQSViews-method.Rd pqsfinder/man/show-PQSViews-method.Rd pqsfinder/man/strand-PQSViews-method.Rd
pqsfinder/src
pqsfinder/src/Makevars
pqsfinder/src/RcppExports.cpp
pqsfinder/src/boost_regex
pqsfinder/src/boost_regex/c_regex_traits.cpp
pqsfinder/src/boost_regex/c_regex_traits.o
pqsfinder/src/boost_regex/cpp_regex_traits.cpp
pqsfinder/src/boost_regex/cpp_regex_traits.o
pqsfinder/src/boost_regex/cregex.cpp
pqsfinder/src/boost_regex/cregex.o
pqsfinder/src/boost_regex/fileiter.cpp
pqsfinder/src/boost_regex/fileiter.o
pqsfinder/src/boost_regex/icu.cpp
pqsfinder/src/boost_regex/icu.o
pqsfinder/src/boost_regex/instances.cpp
pqsfinder/src/boost_regex/instances.o
pqsfinder/src/boost_regex/internals.hpp
pqsfinder/src/boost_regex/posix_api.cpp
pqsfinder/src/boost_regex/posix_api.o
pqsfinder/src/boost_regex/regex.cpp
pqsfinder/src/boost_regex/regex.o
pqsfinder/src/boost_regex/regex_debug.cpp
pqsfinder/src/boost_regex/regex_debug.o
pqsfinder/src/boost_regex/regex_raw_buffer.cpp
pqsfinder/src/boost_regex/regex_raw_buffer.o
pqsfinder/src/boost_regex/regex_traits_defaults.cpp
pqsfinder/src/boost_regex/regex_traits_defaults.o
pqsfinder/src/boost_regex/static_mutex.cpp
pqsfinder/src/boost_regex/static_mutex.o
pqsfinder/src/boost_regex/usinstances.cpp
pqsfinder/src/boost_regex/usinstances.o
pqsfinder/src/boost_regex/w32_regex_traits.cpp
pqsfinder/src/boost_regex/w32_regex_traits.o
pqsfinder/src/boost_regex/wc_regex_traits.cpp
pqsfinder/src/boost_regex/wc_regex_traits.o
pqsfinder/src/boost_regex/wide_posix_api.cpp
pqsfinder/src/boost_regex/wide_posix_api.o
pqsfinder/src/boost_regex/winstances.cpp
pqsfinder/src/boost_regex/winstances.o
pqsfinder/src/pqs_cache.h
pqsfinder/src/pqs_storage.h
pqsfinder/src/pqsfinder.cpp
pqsfinder/src/results.h
pqsfinder/vignettes
pqsfinder/vignettes/pqsfinder.Rmd
pqsfinder/vignettes/pqsfinder.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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