pqsfinder: Identification of potential quadruplex forming sequences

The main functionality of this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.

Package details

AuthorJiri Hon, Matej Lexa and Tomas Martinek
Bioconductor views GeneRegulation MotifDiscovery SequenceMatching
MaintainerJiri Hon <[email protected]>
LicenseBSD_2_clause + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

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pqsfinder documentation built on Nov. 1, 2018, 4:28 a.m.