The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.
|Author||Jiri Hon, Matej Lexa and Tomas Martinek|
|Bioconductor views||GeneRegulation MotifDiscovery SequenceMatching|
|Date of publication||None|
|Maintainer||Jiri Hon <email@example.com>|
|License||BSD_2_clause + file LICENSE|
as.character-PQSViews-method: Coerce to character vector
density-PQSViews-method: Get density vector
maxScores: Get vector of maximal scores
maxScores-PQSViews-method: Get vector of maximal scores
pqsfinder: Identificate potential quadruplex forming sequences.
PQSViews: PQSViews class constructor
PQSViews-class: An S4 class to represent potential quadruplex forming...
score-PQSViews-method: Get PQS score vector
show-PQSViews-method: Show method
strand-PQSViews-method: Get PQS strand vector
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