motifRG: A package for discriminative motif discovery, designed for high throughput sequencing dataset

Tools for discriminative motif discovery using regression methods

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("motifRG")
AuthorZizhen Yao
Bioconductor views MotifDiscovery Transcription
Date of publicationNone
MaintainerZizhen Yao <yzizhen@fhcrc.org>
LicenseArtistic-2.0
Version1.18.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/motif.rg.R R/pwm.model.R R/seq.util.R
build
build/vignette.rds
data
data/YY1.control.rda
data/YY1.peak.rda
data/ctcf.motifs.rda
inst
inst/Scripts
inst/Scripts/analysis.R
inst/css
inst/css/header.html
inst/doc
inst/doc/motifRG.R
inst/doc/motifRG.Rnw
inst/doc/motifRG.pdf
inst/extdata
inst/extdata/MD.control.fa
inst/extdata/MD.peak.fa
inst/extdata/ctcf.fa
man
man/Motif.Rd man/YY1.control.Rd man/YY1.peak.Rd man/ctcf.motifs.Rd man/findMotif.Rd man/findMotifFasta.Rd man/findMotifFgBg.Rd man/getSequence.Rd man/motifLatexTable.Rd man/plotMotif.Rd man/refinePWMMotif.Rd man/refinePWMMotifExtend.Rd man/summaryMotif.Rd
vignettes
vignettes/motifRG.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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