API for motifRG
A package for discriminative motif discovery, designed for high throughput sequencing dataset

Global functions
Motif-class Man page
YY1.control Man page
YY1.peak Man page
addGap Source code
addReversecomplement Source code
appendNucleotides Source code
bestPWMMatch Source code
bestPWMMatchCoor Source code
class:Motif Man page
combineReversecomplement Source code
consensus Source code
countNmer Source code
countSet Source code
countSetGeneral Source code
ctcf.motifs Man page
degeneratePattern Source code
discretize.glm Source code
entropy Source code
enumerateNmer Source code
expandPattern Source code
findMotif Man page Source code
findMotifFasta Man page Source code
findMotifFgBg Man page Source code
findPatternView Source code
getPWM Source code
getScore Source code
getScore.bootStrap Source code
getSequence Man page Source code
isContained Source code
isPalindrome Source code
logPWM Source code
maskPattern Source code
matchPWMCoor Source code
motifHtmlTable Man page Source code
motifLatexTable Man page Source code
motifScore Source code
my.pvec Source code
pasteSeq Source code
patternInfo Source code
plotMotif Man page Source code
plotPWM Source code
plotPair Source code
polyn Source code
reduceReversecomplement Source code
refinePWMMotif Man page Source code
refinePWMMotifExtend Man page Source code
relativeEntropy Source code
scanPWMMatch Source code
seqToMatrix Source code
split.pwm Source code
summaryMotif Man page Source code
trimPattern Source code
motifRG documentation built on May 2, 2018, 4:10 a.m.