PCAN: Phenotype Consensus ANalysis (PCAN)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

AuthorMatthew Page and Patrice Godard
Date of publicationNone
MaintainerMatthew Page <matthew.page@ucb.com> and Patrice Godard <patrice.godard@gmail.com>
LicenseCC BY-NC-ND 4.0
Version1.2.1

View on Bioconductor

Files in this package

PCAN/DESCRIPTION
PCAN/NAMESPACE
PCAN/R
PCAN/R/calcHpSim.R PCAN/R/compareHPSets.R PCAN/R/computeHpIC.R PCAN/R/dataDoc.R PCAN/R/hpGeneHeatmap.R PCAN/R/hpGeneListComp.R PCAN/R/hpSetCompBestMatch.R PCAN/R/hpSetCompSummary.R
PCAN/build
PCAN/build/vignette.rds
PCAN/data
PCAN/data/datalist
PCAN/data/geneByHp.rda
PCAN/data/geneByTrait.rda
PCAN/data/geneDef.rda
PCAN/data/hpByTrait.rda
PCAN/data/hpDef.rda
PCAN/data/hp_ancestors.rda
PCAN/data/hp_class.rda
PCAN/data/hp_descendants.rda
PCAN/data/hqStrNw.rda
PCAN/data/hsEntrezByRPath.rda
PCAN/data/rPath.rda
PCAN/data/traitDef.rda
PCAN/inst
PCAN/inst/CITATION
PCAN/inst/DataPackage-Generator
PCAN/inst/DataPackage-Generator/Documentation
PCAN/inst/DataPackage-Generator/Documentation/Data.dia
PCAN/inst/DataPackage-Generator/Documentation/Data.png
PCAN/inst/DataPackage-Generator/Documentation/clinvar_public-2015-04-03.xsd
PCAN/inst/DataPackage-Generator/Package-Template
PCAN/inst/DataPackage-Generator/Package-Template/DESCRIPTION
PCAN/inst/DataPackage-Generator/Package-Template/NAMESPACE
PCAN/inst/DataPackage-Generator/Package-Template/R
PCAN/inst/DataPackage-Generator/Package-Template/R/MultiPhenoDB.R
PCAN/inst/DataPackage-Generator/Package-Template/R/zzz.R
PCAN/inst/DataPackage-Generator/Package-Template/examples
PCAN/inst/DataPackage-Generator/Package-Template/examples/dataModel.R
PCAN/inst/DataPackage-Generator/Package-Template/examples/geneAssociations.R
PCAN/inst/DataPackage-Generator/Package-Template/man
PCAN/inst/DataPackage-Generator/Package-Template/man/filterGeneByTrait.Rd
PCAN/inst/DataPackage-Generator/Package-Template/man/getDataModel.Rd
PCAN/inst/DataPackage-Generator/Package-Template/man/getGeneByHp.Rd
PCAN/inst/DataPackage-Generator/Package-Template/man/getHpByGene.Rd
PCAN/inst/DataPackage-Generator/Package-Template/man/mhphdb.con.Rd
PCAN/inst/DataPackage-Generator/README.txt
PCAN/inst/DataPackage-Generator/SA00-Gathering-Data.R
PCAN/inst/DataPackage-Generator/SA01-Reference-Clinical-Variation.R
PCAN/inst/DataPackage-Generator/SA02-ClinVar.R
PCAN/inst/DataPackage-Generator/SA03-MedGen.R
PCAN/inst/DataPackage-Generator/SA04-HP.R
PCAN/inst/DataPackage-Generator/SA05-Orphanet.R
PCAN/inst/DataPackage-Generator/SA06-Integration-Semantic-Similarity.R
PCAN/inst/DataPackage-Generator/SB00-PackageGenerator.R
PCAN/inst/DataPackage-Generator/clinVar-Functions.R
PCAN/inst/doc
PCAN/inst/doc/PCAN.R
PCAN/inst/doc/PCAN.Rmd
PCAN/inst/doc/PCAN.html
PCAN/man
PCAN/man/calcHpSim.Rd PCAN/man/compareHPSets.Rd PCAN/man/computeHpIC.Rd PCAN/man/geneByHp.Rd PCAN/man/geneByTrait.Rd PCAN/man/geneDef.Rd PCAN/man/hpByTrait.Rd PCAN/man/hpDef.Rd PCAN/man/hpGeneHeatmap.Rd PCAN/man/hpGeneListComp.Rd PCAN/man/hpSetCompBestMatch.Rd PCAN/man/hpSetCompSummary.Rd PCAN/man/hp_ancestors.Rd PCAN/man/hp_class.Rd PCAN/man/hp_descendants.Rd PCAN/man/hqStrNw.Rd PCAN/man/hsEntrezByRPath.Rd PCAN/man/rPath.Rd PCAN/man/traitDef.Rd
PCAN/vignettes
PCAN/vignettes/PCAN.Rmd
PCAN/vignettes/bibliography.bib

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