Man pages for PCAN
Phenotype Consensus ANalysis (PCAN)
| calcHpSim | Compare HP terms based on semantic similarity |
| compareHPSets | Compare 2 sets of HP terms based on semantic similarity |
| computeHpIC | Compute Information Content (IC) for each HP based on genes... |
| geneByHp | Entrez gene IDs associated to HP terms (Example data) |
| geneByTrait | Gene associated to trait (Example data) |
| geneDef | Description of genes (Example data) |
| hp_ancestors | HP ancestors (Example data) |
| hpByTrait | HP IDs associated to trait (Example data) |
| hp_class | HP class (Example data) |
| hpDef | Description of HP terms (Example data) |
| hp_descendants | HP descendants (Example data) |
| hpGeneHeatmap | HP to Gene heatmap |
| hpGeneListComp | HP semantic similarity for a whole gene list. |
| hpSetCompBestMatch | Best matches between two sets of HP terms |
| hpSetCompSummary | Global semantic similarity between 2 HP sets |
| hqStrNw | STRIND database network of Homo sapiens genes (Example data) |
| hsEntrezByRPath | Homo sapiens entrez gene ID by Reactome pathway (Example... |
| rPath | Reactome pathways (Example data) |
| traitDef | Description of Traits (Example data) |
