hp_class: HP class (Example data)

Description Format Details Source Examples

Description

Each HP term can be of one or several classes. Classes are HP terms direct descendants of the 'Phenotypic abnormality' term.

Format

A named list of 10962 character vectors.

Details

These data are used to examplify the different functions of the package. More data are available in the MultiHumanPhenoDB package.

Source

http://compbio.charite.de/hudson/job/hpo/1529/artifact/hp/hp.obo

Examples

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data(hpDef, hp_class, package="PCAN")
hp <- "HP:0100089"
hpDef[which(hpDef$id==hp),]
# This term has 2 classes:
hpDef[which(hpDef$id %in% hp_class[[hp]]),] 

PCAN documentation built on Nov. 8, 2020, 6:47 p.m.