hp_class: HP class (Example data)

In PCAN: Phenotype Consensus ANalysis (PCAN)

Description

Each HP term can be of one or several classes. Classes are HP terms direct descendants of the 'Phenotypic abnormality' term.

Format

A named list of 10962 character vectors.

Details

These data are used to examplify the different functions of the package. More data are available in the MultiHumanPhenoDB package.

Source

http://compbio.charite.de/hudson/job/hpo/1529/artifact/hp/hp.obo

Examples

data(hpDef, hp_class, package="PCAN")
hp <- "HP:0100089"
hpDef[which(hpDef$id==hp),]
# This term has 2 classes:
hpDef[which(hpDef$id %in% hp_class[[hp]]),] 

PCAN documentation built on Nov. 8, 2020, 6:47 p.m.