hsEntrezByRPath: Homo sapiens entrez gene ID by Reactome pathway (Example...
In PCAN: Phenotype Consensus ANalysis (PCAN)
Description
Format
Source
Examples
Description
The human genes coding for proteins involved in
the different Reactome pathways.
Format
A named list of 1345 character vectors.
Source
Two ressources were used in June 2 2015:
http://www.reactome.org/download/current/UniProt2Reactome.txt
was used to get list of Uniprot ID associated to each pathway.
-
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz
was used to map Uniprot ID to Entrez gene IDs
Examples
1
## Not run: example(hpGeneListComp)
Example output
Loading required package: BiocParallel
PCAN documentation built on Nov. 8, 2020, 6:47 p.m.
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Description Format Source Examples
Description
The human genes coding for proteins involved in the different Reactome pathways.
Format
A named list of 1345 character vectors.
Source
Two ressources were used in June 2 2015:
http://www.reactome.org/download/current/UniProt2Reactome.txt was used to get list of Uniprot ID associated to each pathway.
-
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz was used to map Uniprot ID to Entrez gene IDs
Examples
1 | ## Not run: example(hpGeneListComp)
|
Example output
Loading required package: BiocParallel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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