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enviPathR: Client for the 'enviPath' 'RESTful' API
The environmental pathway database ('enviPath') is a key resource for the functional annotation and pathway prediction of microbial communities, providing knowledge on biotransformation pathways along with the chemical reactions and produced compounds. This package enables the programmatic access to 'enviPath' by porting the database 'RESTful' API from R. This includes methods to both retrieve entries and predict pathways for custom compounds.
Package details |
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| Author | Giulio Benedetti [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-8732-7692>) |
| Bioconductor views | Annotation Cheminformatics DataImport FunctionalPrediction Pathways Software |
| Maintainer | Giulio Benedetti <giulio.benedetti@utu.fi> |
| License | Artistic-2.0 |
| Version | 1.0.0 |
| URL | https://envipath.github.io/enviPathR/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the enviPathR package in your browser
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