This R package is designed for case-control RNA-Seq analysis (two-group). There are six steps: "RNASeqRParam S4 Object Creation", "Environment Setup", "Quality Assessment", "Reads Alignment & Quantification", "Gene-level Differential Analyses" and "Functional Analyses". Each step corresponds to a function in this package. After running functions in order, a basic RNASeq analysis would be done easily.
|Bioconductor views||Alignment Clustering DataImport DifferentialExpression ExperimentalDesign FunctionalPrediction GO GeneExpression GeneSetEnrichment Genetics ImmunoOncology Infrastructure KEGG Normalization Pathways QualityControl RNASeq Sequencing Visualization|
|Maintainer||Kuan-Hao Chao <firstname.lastname@example.org>|
|Package repository||View on GitHub|
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