API for HowardChao/RNASeqWorkflow
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
| Global functions | |
|---|---|
| .onAttach | Source code |
| AlignmentPlot | Source code |
| All_Steps_Interface | Man page Source code |
| All_Steps_Interface_CMD | Man page Source code |
| BallgownAnalysis | Source code |
| BallgownTranscriptRelatedPlot | Source code |
| Check2to3 | Source code |
| CheckCaseControlGroup | Source code |
| CheckGffcompare | Source code |
| CheckGoLevel | Source code |
| CheckHisat2 | Source code |
| CheckInputDirFiles | Source code |
| CheckInputDirFiles_Bam | Source code |
| CheckInputDirFiles_Sam | Source code |
| CheckInputParamNa | Source code |
| CheckInputPrefixPath | Source code |
| CheckOperatingSystem | Source code |
| CheckPhenodata | Source code |
| CheckPhenodata_Bam | Source code |
| CheckPhenodata_Sam | Source code |
| CheckPrefixPath | Source code |
| CheckPython | Source code |
| CheckS4Object_All | Source code |
| CheckSTAR | Source code |
| CheckSamtools | Source code |
| CheckStringTie | Source code |
| CheckToolAll | Man page Source code |
| CheckTool_Sam_Bam | Source code |
| CopyInputDir | Source code |
| CopyInputDir_Bam | Source code |
| CopyInputDir_Sam | Source code |
| DEGeneList | Source code |
| DESeq2RawCountAnalysis | Source code |
| ExportPath | Source code |
| FrequencyPlot | Source code |
| GOAnalysis | Source code |
| GetKEGGUrl | Source code |
| GffcompareRefSample | Source code |
| Hisat2AlignmentDefault | Source code |
| InstallAll | Source code |
| InstallGffcompareBinary | Source code |
| InstallHisat2Bianry | Source code |
| InstallStarBianry | Source code |
| InstallStringTieBinary | Source code |
| KEGGAnalysis | Source code |
| KEGGDEGeneList | Source code |
| MkdirAll | Source code |
| MkdirGeneDir | Source code |
| MkdirRNASeq_bin | Source code |
| MkdirRNASeq_results | Source code |
| MkdirRscript_Rscript_out | Source code |
| ParseResultCSV | Source code |
| PostCheckRNASeqQualityAssessment | Source code |
| PostRNASeqDifferentialAnalysis | Source code |
| PostRNASeqEnvironmentSet | Source code |
| PostRNASeqEnvironmentSet_Bam | Source code |
| PostRNASeqEnvironmentSet_Sam | Source code |
| PostRNASeqGoKegg | Source code |
| PostRNASeqReadProcess | Source code |
| PostRNASeqReadProcess_Bam | Source code |
| PostRNASeqReadProcess_Sam | Source code |
| PreCheckRNASeqQualityAssessment | Source code |
| PreDECountTable | Source code |
| PreRNASeqDifferentialAnalysis | Source code |
| PreRNASeqEnvironmentSet | Source code |
| PreRNASeqGoKegg | Source code |
| PreRNASeqReadProcess | Source code |
| PreRNASeqReadProcess_Bam | Source code |
| PreRNASeqReadProcess_Sam | Source code |
| ProgressGenesFiles | Source code |
| RNASeqDifferentialAnalysis | Man page Source code |
| RNASeqDifferentialAnalysis_CMD | Man page Source code |
| RNASeqEnvironmentSet | Man page Source code |
| RNASeqEnvironmentSet_CMD | Man page Source code |
| RNASeqGoKegg | Man page Source code |
| RNASeqGoKegg_CMD | Man page Source code |
| RNASeqQualityAssessment | Man page Source code |
| RNASeqQualityAssessment_CMD | Man page Source code |
| RNASeqR | Man page |
| RNASeqRParam | Man page Source code |
| RNASeqRParam-class | Man page |
| RNASeqRParam-constructor | Man page |
| RNASeqRParam_Bam | Man page Source code |
| RNASeqRParam_Bam-class | Man page |
| RNASeqRParam_Bam-constructor | Man page |
| RNASeqRParam_Sam | Man page Source code |
| RNASeqRParam_Sam-class | Man page |
| RNASeqRParam_Sam-constructor | Man page |
| RNASeqReadProcess | Man page Source code |
| RNASeqReadProcess_CMD | Man page Source code |
| RSamtoolsToBam | Source code |
| RawCountGeneNameChange | Source code |
| RawCountWrap | Source code |
| RawReadCountAvailability | Source code |
| STARAlignmentDefault | Source code |
| StringTieAssemble | Source code |
| StringTieMergeTrans | Source code |
| StringTieToBallgown | Source code |
| Update_Fastq_gz | Man page Source code |
| edgeRRawCountAnalysis | Source code |
| getURL | Source code |
| phenoDataWrap | Source code |
| yeast | Man page |
