BasicSTARRseq: Basic peak calling on STARR-seq data

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

AuthorAnnika Buerger
Date of publicationNone
MaintainerAnnika Buerger <annika.buerger@ukmuenster.de>
LicenseLGPL-3
Version1.2.0

View on Bioconductor

Functions

control Man page
control<- Man page
control<-,STARRseqData,GRanges-method Man page
control,STARRseqData-method Man page
getPeaks Man page
getPeaks,STARRseqData-method Man page
sample Man page
sample<- Man page
sample<-,STARRseqData,GRanges-method Man page
sample,STARRseqData-method Man page
STARRseqData Man page
STARRseqData,character,character,logical-method Man page
STARRseqData-class Man page
STARRseqData,GRanges,GRanges,ANY-method Man page
STARRseqData,GRanges,GRanges-method Man page

Files

BasicSTARRseq/DESCRIPTION
BasicSTARRseq/NAMESPACE
BasicSTARRseq/R
BasicSTARRseq/R/AllClasses.r
BasicSTARRseq/R/AllGenerics.r
BasicSTARRseq/R/getPeaks.R
BasicSTARRseq/R/methods-STARRseqData.r
BasicSTARRseq/build
BasicSTARRseq/build/vignette.rds
BasicSTARRseq/inst
BasicSTARRseq/inst/NEWS.Rd
BasicSTARRseq/inst/doc
BasicSTARRseq/inst/doc/BasicSTARRseq.R
BasicSTARRseq/inst/doc/BasicSTARRseq.pdf
BasicSTARRseq/inst/doc/BasicSTARRseq.rnw
BasicSTARRseq/inst/extdata
BasicSTARRseq/inst/extdata/smallInput.bam
BasicSTARRseq/inst/extdata/smallSTARR.bam
BasicSTARRseq/man
BasicSTARRseq/man/STARRseqData-class.Rd BasicSTARRseq/man/getPeaks.Rd
BasicSTARRseq/vignettes
BasicSTARRseq/vignettes/BasicSTARRseq.rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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