This package takes chromsome conformation capture data as input and annotates each genomic region with segmentation data from StateHub (http://statehub.org/statehub/), for example. This data can then be annotated with the nearest gene and using RNA-seq data, expression values can be linked to each gene. Moreover, these data can be combined into a circle plot with heatmaps showing average score of chromsome conformation capture interaction between segmentation marks as well as average FPKM values for genes in each type of interaction.
|Bioconductor views||ChIPSeq DNA3DStructure FunctionalPrediction GUI GeneExpression GenomeAnnotation HiC Visualization|
|Maintainer||Michael Workman <[email protected]>|
|License||GPL (>= 3)|
|Package repository||View on GitHub|
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