plotup: Generates UpSetR-style plot from overlap data

In mworkman13/HiCAGE: Hi-C Annotation and Graphics Ensemble

Description

Generates UpSetR-style plot from overlap data

Usage

plotup(datafile, ...)

Arguments

datafile	The object output from the overlap function
...	Additional arguments passed to upset function from UpSetR package

Value

Returns an UpSetR plot from overlap data

Examples

hic_chr20 <- system.file("extdata", "hic_chr20.txt", package = "HiCAGE")
segment_chr20 <- system.file("extdata", "segment_chr20.bed",
    package = "HiCAGE")
rna_chr20 <- system.file("extdata", "rna_chr20.tsv", package = "HiCAGE")
overlapoutput <- overlap(hicfile = hic_chr20,
                         segmentfile = segment_chr20,
                         rnafile = rna_chr20)
plotup(datafile = overlapoutput)

mworkman13/HiCAGE documentation built on May 23, 2019, 11:58 a.m.