Biocview "TranscriptomeVariant"

Wancen/airpart

Differential cell-type-specific allelic imbalance

IsoformSwitchAnalyzeR

Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

kvittingseerup/IsoformSwitchAnalyzeR

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

songjiajia2018/LINEAGE

Label-Free Identification of Endogenous Informative Single Cell Mitochondrial RNA Mutation for Lineage Analysis and Clonal Evolution

VCCRI/Sierra

PolyA counting and differential transcript usage analysis for scRNA-seq data

RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

ipw012/RIVERpkg

R package for RIVER (RNA-Informed Variant Effect on Regulation)

ipw012/RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

esebesty/SplicingFactory

Splicing Diversity Analysis for Transcriptome Data

SU-CompBio/SplicingFactory

Splicing Diversity Analysis for Transcriptome Data