Wancen/airpart: Differential cell-type-specific allelic imbalance

Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.

Getting started

Package details

Bioconductor views ATACSeq CellBiology ChIPSeq Clustering DifferentialExpression FunctionalGenomics GeneExpression GeneRegulation GraphAndNetwork QualityControl RNASeq Regression Sequencing SingleCell Transcription TranscriptomeVariant
URL https://github.com/Wancen/airpart
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Wancen/airpart documentation built on April 26, 2022, 2:47 p.m.