Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.
|Bioconductor views||ATACSeq CellBiology ChIPSeq Clustering DifferentialExpression FunctionalGenomics GeneExpression GeneRegulation GraphAndNetwork QualityControl RNASeq Regression Sequencing SingleCell Transcription TranscriptomeVariant|
|Package repository||View on GitHub|
Install the latest version of this package by entering the following in R:
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.