extractResult: Extract results from an airpart analysis

In Wancen/airpart: Differential cell-type-specific allelic imbalance

Extract results from an airpart analysis

Description

results extracts a result table from an airpart analysis giving posterior allelic ratio estimates, s values, false sign rate(fsr), upper confidence interval and lower confidence interval.

Usage

extractResult(sce, estimates = c("ar", "svalue", "fsr", "lower", "upper"))

Arguments

sce	SingleCellExperiment
estimates	the estimates want to be extracted. Default is allelic ratio estimates, can be "svalue", "fsr", "lower"(credible interval) and "upper"(credible interval)

Value

a DataFrame of estimates

Examples

sce <- makeSimulatedData()
sce <- preprocess(sce)
sce <- geneCluster(sce, G = 1:4)
sce_sub <- wilcoxExt(sce, genecluster = 1)
sce_sub <- allelicRatio(sce_sub)
ar <- extractResult(sce_sub)
ar

Wancen/airpart documentation built on March 12, 2023, 11:53 a.m.