This package is designed to model gene detection pattern of scRNA-seq through a binary factor analysis model. This model allows user to pass into a cell level covariate matrix X and gene level covariate matrix Q to account for nuisance variance(e.g batch effect), and it will output a low dimensional embedding matrix for downstream analysis.
|Author||Ruoxin Li [aut, cre], Gerald Quon [aut]|
|Bioconductor views||ATACSeq BatchEffect DimensionReduction GeneExpression KEGG QualityControl SingleCell Transcriptomics|
|Maintainer||Ruoxin Li <firstname.lastname@example.org>|
|License||GPL-3 + file LICENSE|
|Package repository||View on Bioconductor|
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