scran: Methods for Single-Cell RNA-Seq Data Analysis

Implements miscellaneous functions for interpretation of single-cell RNA-seq data. Methods are provided for assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Package details

AuthorAaron Lun [aut, cre], Karsten Bach [aut], Jong Kyoung Kim [ctb], Antonio Scialdone [ctb]
Bioconductor views BatchEffect Clustering GeneExpression ImmunoOncology Normalization RNASeq Sequencing SingleCell Software Transcriptomics Visualization
MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
LicenseGPL-3
Version1.18.7
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scran")

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scran documentation built on April 17, 2021, 6:09 p.m.