Functions that have passed on to the function afterlife. Their successors are also listed.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
testVar are succeeded by a suite of funtions related to
technicalCV2 are succeeded by
makeTechTrend is succeeded by
multiBlockVar is succeeded by the
block argument in many of the modelling functions, and
multiBlockNorm is no longer necessary.
overlapExprs is succeeded by
parallelPCA has been moved over to the PCAtools package.
All functions error out with a defunct message pointing towards its descendent (if available).
Loading required package: BiocParallel Loading required package: scater Loading required package: Biobase Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colSums, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: ggplot2 Attaching package: 'scater' The following object is masked from 'package:stats': filter Error in (function (classes, fdef, mtable) : unable to find an inherited method for function 'trendVar' for signature '"missing"'
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