SVAPLSseq: SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data

The package contains functions that are intended for extracting the signatures of latent variation in RNAseq data and using them to perform an improved differential expression analysis for a set of features (genes, transcripts) between two specified biological groups.

Package details

AuthorSutirtha Chakraborty
Bioconductor views BatchEffect GeneExpression ImmunoOncology Normalization RNASeq
MaintainerSutirtha Chakraborty <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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SVAPLSseq documentation built on April 28, 2020, 6:30 p.m.