SVAPLSseq: SVAPLSseq-An R package to adjust for the hidden factors of variability in differential gene expression studies based on RNAseq data

The package contains functions that are intended for the identification of differentially expressed genes between two groups of samples from RNAseq data after adjusting for various hidden biological and technical factors of variability.

AuthorSutirtha Chakraborty
Date of publicationNone
MaintainerSutirtha Chakraborty <sutirtha_sutir@yahoo.co.in>
LicenseGPL-3
Version1.0.0

View on Bioconductor

Files

SVAPLSseq/DESCRIPTION
SVAPLSseq/NAMESPACE
SVAPLSseq/NEWS
SVAPLSseq/R
SVAPLSseq/R/AllClasses.R SVAPLSseq/R/AllGenerics.R SVAPLSseq/R/Methods.R SVAPLSseq/R/svplsSurr.R SVAPLSseq/R/svplsTest.R
SVAPLSseq/README.md
SVAPLSseq/build
SVAPLSseq/build/vignette.rds
SVAPLSseq/data
SVAPLSseq/data/sim.dat.rda
SVAPLSseq/inst
SVAPLSseq/inst/doc
SVAPLSseq/inst/doc/SVAPLSseq.R
SVAPLSseq/inst/doc/SVAPLSseq.Rnw
SVAPLSseq/inst/doc/SVAPLSseq.pdf
SVAPLSseq/man
SVAPLSseq/man/SVAPLSseq-package.Rd SVAPLSseq/man/prop.vars.Rd SVAPLSseq/man/pvs.adj.Rd SVAPLSseq/man/pvs.unadj.Rd SVAPLSseq/man/sig.genes.Rd SVAPLSseq/man/sim.dat.Rd SVAPLSseq/man/surr.Rd SVAPLSseq/man/svplsSurr-class.Rd SVAPLSseq/man/svplsSurr.Rd SVAPLSseq/man/svplsTest-class.Rd SVAPLSseq/man/svplsTest.Rd
SVAPLSseq/vignettes
SVAPLSseq/vignettes/SVAPLSseq.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.