prop.vars: Accessor for the 'prop.vars' slot of a 'svplsSurr' object

In SVAPLSseq: SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data

Description

Accessor for the 'prop.vars' slot of a 'svplsSurr' object

Usage

prop.vars(object)

## S4 method for signature 'svplsSurr'
prop.vars(object)

Arguments

object

a svplsSurr object

Examples

data(sim.dat)
group = as.factor(c(rep(1, 10), rep(-1, 10)))
sv = svplsSurr(sim.dat, group, surr.select = "automatic")
prop.vars(sv)

SVAPLSseq documentation built on April 28, 2020, 6:30 p.m.