fedeago/NewWave: Negative binomial model for scRNA-seq

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.

Getting started

Package details

Bioconductor views BatchEffect Coverage GeneExpression Regression Sequencing SingleCell Software Transcriptomics
Maintainer
LicenseGPL-3
Version1.1.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("fedeago/NewWave")
fedeago/NewWave documentation built on May 6, 2021, 9:49 a.m.