fedeago/NewWave: Negative binomial model for scRNA-seq

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.

Getting started

Package details

Bioconductor views BatchEffect Coverage GeneExpression Regression Sequencing SingleCell Software Transcriptomics
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
fedeago/NewWave documentation built on May 6, 2021, 9:49 a.m.