CellMixS: Evaluate Cellspecific Mixing

CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.

Package details

AuthorAlmut Lütge [aut, cre]
Bioconductor views BatchEffect GeneExpression SingleCell Transcriptomics
MaintainerAlmut Lütge <almut.luetge@uzh.ch>
LicenseGPL (>=2)
URL https://github.com/almutlue/CellMixS
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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CellMixS documentation built on Dec. 19, 2020, 2 a.m.