Description Usage Arguments Details Value See Also Examples
Plot group label in a reduced dimensional plot.
1 |
sce |
A |
group |
Character. Name of group/batch variable.
Needs to be one of |
dim_red |
Character. Name of embeddings to use as subspace for plotting. Default is "TSNE". |
Plots a reduced dimension plot colored by group parameter.
The dimesion reduction embedding can be specified, but only tsne embeddings
will automatically be computed by runTSNE
. Embeddings from data
integration methods (e.g. mnn.correct) can be used as long as they are
specified in reducedDimNames(sce)
.
a ggplot
object.
Other visualize functions:
visCluster()
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