alpine: alpine

Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.

AuthorMichael Love, Rafael Irizarry
Date of publicationNone
MaintainerMichael Love <michaelisaiahlove@gmail.com>
LicenseGPL (>=2)
Version1.0.0

View on Bioconductor

Functions

alpine-package Man page
buildFragtypes Man page
ebt.fit Man page
ebt.theta Man page
estimateAbundance Man page
extractAlpine Man page
fitBiasModels Man page
fitpar Man page
fitpar.small Man page
genes.theta Man page
getFragmentWidths Man page
getReadLength Man page
mergeGenes Man page
normalizeDESeq Man page
plotFragLen Man page
plotGC Man page
plotGRL Man page
plotOrder0 Man page
plotOrder1 Man page
plotOrder2 Man page
plotRelPos Man page
predictCoverage Man page
preprocessedData Man page
res Man page
splitGenesAcrossChroms Man page
splitLongGenes Man page
txdf.theta Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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