preprocessedData: Preprocessed data for vignettes and examples

Description Format Details Source

Description

The following data objects are prepared for use in the alpine vignette and examples pages, as the preparation of these objects requires either long running time or a large amount of disk space.

Format

ebt.fit and ebt.theta are GRangesList. fitpar, fitpar.small, res are lists created by alpine functions. genes.theta is a character vector. txdf.theta is a DataFrame.

Details

Source

See vignette for details of object construction. The alignments come from alpineData (4 samples from GEUVADIS project), the Ensembl gene annotations come from Homo_sapiens.GRCh38.84.gtf, and the genome is BSgenome.Hsapiens.NCBI.GRCh38.


alpine documentation built on May 31, 2017, 2:59 p.m.

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