erccdashboard: Assess Differential Gene Expression Experiments with ERCC Controls

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

AuthorSarah Munro, Steve Lund
Date of publicationNone
MaintainerSarah Munro <sarah.munro@nist.gov>
LicenseGPL (>=2)
Version1.8.0
http://www.nist.gov/mml/bbd/erccdashboard.cfm, https://github.com/usnistgov/erccdashboard, http://tinyurl.com/erccsrm

View on Bioconductor

Files in this package

erccdashboard/DESCRIPTION
erccdashboard/NAMESPACE
erccdashboard/NEWS
erccdashboard/R
erccdashboard/R/annotLODR.R erccdashboard/R/dashboardFile.R erccdashboard/R/dynRangePlot.R erccdashboard/R/erccROC.R erccdashboard/R/estLODR.R erccdashboard/R/est_r_m.R erccdashboard/R/geneExprTest.R erccdashboard/R/getDesignMat.R erccdashboard/R/initDat.R erccdashboard/R/loadERCCInfo.R erccdashboard/R/loadExpMeas.R erccdashboard/R/maSignal.R erccdashboard/R/normalizeDat.R erccdashboard/R/plotAdjust.R erccdashboard/R/prepERCCDat.R erccdashboard/R/printLODRres.R erccdashboard/R/runDashboard.R erccdashboard/R/saveERCCPlots.R erccdashboard/R/testDEArray.R erccdashboard/R/testDECount.R
erccdashboard/build
erccdashboard/build/vignette.rds
erccdashboard/data
erccdashboard/data/ERCC.RData
erccdashboard/data/SEQC.Example.RData
erccdashboard/data/datalist
erccdashboard/inst
erccdashboard/inst/CITATION
erccdashboard/inst/doc
erccdashboard/inst/doc/erccdashboard.R
erccdashboard/inst/doc/erccdashboard.Rnw
erccdashboard/inst/doc/erccdashboard.pdf
erccdashboard/man
erccdashboard/man/ERCC.Rd erccdashboard/man/ERCCDef.Rd erccdashboard/man/ERCCMix1and2.Rd erccdashboard/man/MET.CTL.countDat.Rd erccdashboard/man/MET.CTL.totalReads.Rd erccdashboard/man/SEQC.Example.Rd erccdashboard/man/UHRR.HBRR.arrayDat.Rd erccdashboard/man/UHRR.HBRR.countDat.Rd erccdashboard/man/UHRR.HBRR.totalReads.Rd erccdashboard/man/annotLODR.Rd erccdashboard/man/dynRangePlot.Rd erccdashboard/man/erccROC.Rd erccdashboard/man/estLODR.Rd erccdashboard/man/est_r_m.Rd erccdashboard/man/geneExprTest.Rd erccdashboard/man/initDat.Rd erccdashboard/man/maSignal.Rd erccdashboard/man/runDashboard.Rd erccdashboard/man/saveERCCPlots.Rd
erccdashboard/vignettes
erccdashboard/vignettes/erccdashboard.Rnw

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