erccdashboard: Assess Differential Gene Expression Experiments with ERCC Controls

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

AuthorSarah Munro, Steve Lund
Date of publicationNone
MaintainerSarah Munro <sarah.munro@nist.gov>
LicenseGPL (>=2)
Version1.8.0
http://www.nist.gov/mml/bbd/erccdashboard.cfm, https://github.com/usnistgov/erccdashboard, http://tinyurl.com/erccsrm

View on Bioconductor

Functions

annotLODR Man page
dynRangePlot Man page
ERCC Man page
ERCCDef Man page
ERCCMix1and2 Man page
erccROC Man page
estLODR Man page
est_r_m Man page
geneExprTest Man page
initDat Man page
maSignal Man page
MET.CTL.countDat Man page
MET.CTL.totalReads Man page
runDashboard Man page
saveERCCPlots Man page
SEQC.Example Man page
UHRR.HBRR.arrayDat Man page
UHRR.HBRR.countDat Man page
UHRR.HBRR.totalReads Man page

Files

erccdashboard/DESCRIPTION
erccdashboard/NAMESPACE
erccdashboard/NEWS
erccdashboard/R
erccdashboard/R/annotLODR.R erccdashboard/R/dashboardFile.R erccdashboard/R/dynRangePlot.R erccdashboard/R/erccROC.R erccdashboard/R/estLODR.R erccdashboard/R/est_r_m.R erccdashboard/R/geneExprTest.R erccdashboard/R/getDesignMat.R erccdashboard/R/initDat.R erccdashboard/R/loadERCCInfo.R erccdashboard/R/loadExpMeas.R erccdashboard/R/maSignal.R erccdashboard/R/normalizeDat.R erccdashboard/R/plotAdjust.R erccdashboard/R/prepERCCDat.R erccdashboard/R/printLODRres.R erccdashboard/R/runDashboard.R erccdashboard/R/saveERCCPlots.R erccdashboard/R/testDEArray.R erccdashboard/R/testDECount.R
erccdashboard/build
erccdashboard/build/vignette.rds
erccdashboard/data
erccdashboard/data/ERCC.RData
erccdashboard/data/SEQC.Example.RData
erccdashboard/data/datalist
erccdashboard/inst
erccdashboard/inst/CITATION
erccdashboard/inst/doc
erccdashboard/inst/doc/erccdashboard.R
erccdashboard/inst/doc/erccdashboard.Rnw
erccdashboard/inst/doc/erccdashboard.pdf
erccdashboard/man
erccdashboard/man/ERCC.Rd erccdashboard/man/ERCCDef.Rd erccdashboard/man/ERCCMix1and2.Rd erccdashboard/man/MET.CTL.countDat.Rd erccdashboard/man/MET.CTL.totalReads.Rd erccdashboard/man/SEQC.Example.Rd erccdashboard/man/UHRR.HBRR.arrayDat.Rd erccdashboard/man/UHRR.HBRR.countDat.Rd erccdashboard/man/UHRR.HBRR.totalReads.Rd erccdashboard/man/annotLODR.Rd erccdashboard/man/dynRangePlot.Rd erccdashboard/man/erccROC.Rd erccdashboard/man/estLODR.Rd erccdashboard/man/est_r_m.Rd erccdashboard/man/geneExprTest.Rd erccdashboard/man/initDat.Rd erccdashboard/man/maSignal.Rd erccdashboard/man/runDashboard.Rd erccdashboard/man/saveERCCPlots.Rd
erccdashboard/vignettes
erccdashboard/vignettes/erccdashboard.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.