dynRangePlot: Produce signal-abundance plot to evaluate dynamic range

In erccdashboard: Assess Differential Gene Expression Experiments with ERCC Controls

Description

Produce signal-abundance plot to evaluate dynamic range

Usage

dynRangePlot(exDat, allPoints, labelReps)

Arguments

exDat	list, contains input data and stores analysis results
allPoints	boolean, default is false, means of replicates will be plotted. If true then all replicates will be plotted as individual points.
labelReps	boolean, default is false. If true then replicates will be labeled.

Examples

data(SEQC.Example)

exDat <- initDat(datType="count", isNorm=FALSE, exTable=MET.CTL.countDat, 
                 filenameRoot="testRun", sample1Name="MET", 
                 sample2Name="CTL", erccmix="RatioPair", 
                 erccdilution=1/100, spikeVol=1, totalRNAmass=0.500,
                 choseFDR=0.1)
                 
exDat <- est_r_m(exDat)
                  
exDat <- dynRangePlot(exDat, allPoints="FALSE", labelReps ="FALSE")

exDat$Figures$dynRangePlot

erccdashboard documentation built on Nov. 8, 2020, 5:50 p.m.