symbioticMe/proBatch: Tools for Diagnostics and Corrections of Batch Effects in Proteomics
These tools facilitate batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.
Getting started
Browse package contents
Package details |
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| Author | Jelena Cuklina <chuklina.jelena@gmail.com>, Chloe H. Lee <chloe.h.lee94@gmail.com>, Patrick Pedrioli <pedrioli@gmail.com> |
| Bioconductor views | BatchEffect MassSpectrometry Normalization Preprocessing Proteomics QualityControl Software |
| Maintainer | Olga Zolotareva <olga.zolotareva@uni-hamburg.de>, Yuliya Burankova <yuliya.burankova@uni-hamburg.de> |
| License | GPL-3 |
| Version | 1.3.0 |
| URL | https://github.com/symbioticMe/proBatch |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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