plot_CV_distr.df: Plot the distribution (boxplots) of per-batch per-step CV of...

In symbioticMe/proBatch: Tools for Diagnostics and Corrections of Batch Effects in Proteomics

Plot the distribution (boxplots) of per-batch per-step CV of features

Description

Plot the distribution (boxplots) of per-batch per-step CV of features

Usage

plot_CV_distr.df(CV_df, plot_title = NULL, filename = NULL,
  theme = "classic", log_y_scale = TRUE)

Arguments

CV_df	data frame with Total CV for each feature & (optionally) per-batch CV
plot_title	title of the plot (e.g., processing step + representation level (fragments, transitions, proteins) + purpose (meanplot/corrplot etc))
filename	path where the results are saved. If null the object is returned to the active window; otherwise, the object is save into the file. Currently only pdf and png format is supported
theme	ggplot theme, by default classic. Can be easily overriden
log_y_scale	(logical) whether to display the CV on log-scale

Value

ggplot object

symbioticMe/proBatch documentation built on April 9, 2023, 11:59 a.m.