The proBatch package facilitates batch effects analysis and correction in high-thoughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.
|Author||Jelena Cuklina <[email protected]>, Chloe H. Lee <[email protected]>, Patrick Pedrioli <[email protected]>|
|Bioconductor views||BatchEffect GeneExpression MassSpectrometry Normalization Preprocessing Proteomics QualityControl Software|
|Maintainer||Chloe H. Lee <[email protected]>|
|Package repository||View on Bioconductor|
Install the latest version of this package by entering the following in R:
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.