proBatch: Tools for Diagnostics and Corrections of Batch Effects in Proteomics

The proBatch package facilitates batch effects analysis and correction in high-thoughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.

Package details

AuthorJelena Cuklina <[email protected]>, Chloe H. Lee <[email protected]>, Patrick Pedrioli <[email protected]>
Bioconductor views BatchEffect GeneExpression MassSpectrometry Normalization Preprocessing Proteomics QualityControl Software
MaintainerChloe H. Lee <[email protected]>
LicenseGPL-3
Version1.0.0
URL https://github.com/symbioticMe/proBatch
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("proBatch")

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proBatch documentation built on May 6, 2019, 3:54 a.m.