kvittingseerup/IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNA-seq (short/long) by tools such as Kallisto, Salmon, StringTie, Tallon, IsoQuant etc.

Getting started

Package details

Bioconductor views AlternativeSplicing Annotation BatchEffect BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction ImmunoOncology MultipleComparison RNASeq StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization
LicenseGPL (>= 2)
URL http://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kvittingseerup/IsoformSwitchAnalyzeR documentation built on Jan. 14, 2024, 11:30 p.m.