kvittingseerup/IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNA-seq (short/long) by tools such as Kallisto, Salmon, StringTie, Tallon, IsoQuant etc.
Getting started
Browse package contents
Package details |
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| Bioconductor views | AlternativeSplicing Annotation BatchEffect BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction ImmunoOncology MultipleComparison RNASeq StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization |
| Maintainer | |
| License | GPL (>= 2) |
| Version | 2.1.3 |
| URL | http://bioconductor.org/packages/IsoformSwitchAnalyzeR/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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