kvittingseerup/IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

Getting started

Package details

Bioconductor views AlternativeSplicing Annotation BatchEffect BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction ImmunoOncology MultipleComparison RNASeq StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization
Maintainer
LicenseGPL (>= 2)
Version1.13.07
URL http://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kvittingseerup/IsoformSwitchAnalyzeR")
kvittingseerup/IsoformSwitchAnalyzeR documentation built on May 12, 2021, 12:25 p.m.