kvittingseerup/IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

IsoformSwitchAnalyzeR enables identification and analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.

Getting started

Package details

AuthorKristoffer Vitting-Seerup
Bioconductor views AlternativeSplicing Annotation BatchEffect BiomedicalInformatics DataImport DifferentialExpression DifferentialSplicing FunctionalGenomics FunctionalPrediction GeneExpression GenePrediction ImmunoOncology MultipleComparison RNASeq StatisticalMethod SystemsBiology Transcription TranscriptomeVariant Transcriptomics Visualization
MaintainerKristoffer Vitting-Seerup <[email protected]>
LicenseGPL (>= 2)
Version1.7.1
URL http://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kvittingseerup/IsoformSwitchAnalyzeR")
kvittingseerup/IsoformSwitchAnalyzeR documentation built on July 20, 2019, 8:54 a.m.