testData: Example data for IsoformSwitchAnalyzeR

Description Usage Format Details Source References Examples

Description

Three switchAnalyzeRlist corresponding to a switchAnalyzeRlist in different stages of an isoform switch analyzer workflow.

Usage

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data("exampleSwitchList")

data("exampleSwitchListIntermediary")

data("exampleSwitchListAnalyzed")

Format

see ?createSwitchAnalyzeRlist for detailed format of an switchAnalyzeRlist

Details

The three example switchAnalyzeRlist are:

Source

exampleSwitchList and exampleSwitchListIntermediary is a modified subset of a dataset comparing human Embryonic Stemm Cells (hESC) vs induced Pluripotent Cells (iPS) and mature cells (Fibroblast) originally released with the cummeRbund package. This data is only included to provide examples for usage of function. As it is modified to illustrate the package it should not be considered real and no conclusions should be made from it.

The exampleSwitchListAnalyzed is a subset of two of the TCGA Cancer types analyzed in Vitting-Seerup et al 2017 and are unmodified meaning results are real!

References

Vitting-Seerup et al. The Landscape of Isoform Switches in Human Cancers. Mol. Cancer Res. (2017).

Examples

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### Summarize newly created switchAnalyzeRList
data("exampleSwitchList")
summary(exampleSwitchList)

kvittingseerup/IsoformSwitchAnalyzeR documentation built on July 20, 2019, 8:54 a.m.